NEWS
MassWateR 2.1.5 (2024-10-20)
- Added check to
checkMWRresults()
for results data to verify all values in the quantitation limit column are numbers, with updated instructions in the results template file
- Parameter list (
paramMWR
) updated with Pycocyanin, Phycocyanin (probe), RFU as unit for chlorophyll, including appropriate updates to thresholdMWR
, results template, and WQX phys-chem template
- Removed prettymapr, raster, added maptile and tidyterra for
anlzMWRmap()
basemaps, this changes the options that are accepted by the maptype
argument
MassWateR 2.1.4 (2023-11-19)
- Improved warning message for all empty or
na
entries in checkMWRacc()
and checkMWRfrecom()
- Fixed spelling of
tabMWRwqx()
output in the Result Detection Condition
column for "Present Above Quantification Limit"
- Fix to
checkMWRacc()
if more than two value ranges in DQO accuracy file as ascending, previously resulted in error
- Fix to incorrect parameter paste in error message in
checkMWRfrecom()
if values less than 0 or greater than 100 are found
- Improved tests to check error or warning messages for
checkMWRfrecom()
and checkMWRacc()
MassWateR 2.1.3 (2023-10-26)
anlzMWRmap()
has different basemap options using the maptype
argument, these include "cartolight"
, "cartodark"
, "osm"
, or "hotstyle"
. These changes accommodate recent issues with access to stamen tiles.
- ggmap dependency was removed, added raster and prettymapr dependencies
- Fixed issue in Roxygen documentation for itemized lists
MassWateR 2.1.2 (2023-10-06)
- Warning is now returned if a column for a QC check includes all
na
entries on import of the DQO accuracy file with readMWRacc()
readMWRacc()
no longer uses dplyr::na_if()
on all columns, only for numeric, to correctly identify columns that have all na
entries for a QC check
- Sorting behavior for
dplyr::arrange()
reverted to .locale = 'en'
to ignore case
utilMWRfre()
function added to prep results data for frequency checks, similar to existing utilMWRlimits()
function
- Correct number of data records is now reported by
tabMWRfre()
following value range filtering
tabMWRfre()
and qcMWRfre()
now require the DQO accuracy file as input to identify appropriate ranges to check for each parameter using the value range column
- Added
utilMWRvaluerange()
function to check for na
, gaps, and overlap in the value range column on import of the DQO accuracy file with readMWRacc()
- Error is now returned if overlapping value ranges are present in the DQO accuracy file
- Warning now returned if gaps are present in the value ranges for a parameter in the DQO accuracy file
- Fix to
checkMWRacc()
to convert MDL and UQL columns in DQO accuracy as numeric following import as text
- Fixed bug to evaluate lab spike QC checks as the absolute difference, was previously a relative difference
- New error message if the upper value range in the DQO accuracy file is not a percent value for lab spike QC checks with units as percentage
- Lab spikes entered as a percent measure are now always evaluated against the data quality objective for the upper value range
- Better error and warning messages for
tabMWRacc()
for incorrect and required data for individual QC checks
MassWateR 2.1.1 (2023-07-16)
- Fix to incorrect secondary label for Enterococcus in
thresholdMWR
- Corrected column name to
Record ID User Supplied
in WQX output from tabMWRwqx()
- Fix for
tabMWRwqx()
output if no entries in QC Reference Value
column in the results file, this previously resulted in an error
formMWRresults()
no longer imports dplyr and tidyr in Roxygen documentation
formMWRresults()
now handles time and text inputs for Activity Start Time
from Excel, all times are correctly formatted as HH:MM in 24 hour time. This includes more robust testing of inputs in text-formMWRresults.R
.
- Added check for data quality objectives for accuracy that returns an error if
na
entries are included in the Value Range
column, should be all
MassWateR 2.1.0 (2023-06-01)
- Added option to report mean, median, min, max, or geometric mean in summary plots and maps
- Updated
utilMWRtitle()
function to accommodate the previous point
- Replaced
utilMWRconfint()
function with utilMWRsummary()
for additional summary functions
- Added option to change the scale bar from km to mi on the map created with
anlzMWRmap()
- Added option to reverse the color ramp in the legend created with
anlzMWRmap()
- All columns in the results file are now required on input with
readMWRresults()
, this includes a new column Local Record ID
- Added a new check for depth data in the results file used by
checkMWRresults()
, must be present with no missing values
- Removed cryptic error messages when confidence intervals cannot be plotted, replaced with informative warning
- Fix to
qcMWRacc()
if output list elements return a data frame with zero rows
- Fix to output message that was creating duplicates when a file is saved to disk
- Fixed incorrect entry description for E. coli in
thresholdMWR
- Data input template files and example files updated
- Created a vignette about the utility functions and added an example using
patchwork
in the modifying plots vignette
MassWateR 2.0.2 (2023-03-21)
utilMWRfilter
has fix to date filter and no longer uses lubridate::ymd
- All but one test removed for
utilMWRfilter
, covered in other tests
- Text for modifying vignette edited for better examples
- Out of state article to vignettes
- Added
utilMWRhttpgrace
for graceful fails if http requests do not work, applies to anlzMWRmap
MassWateR 2.0.1 (2023-02-06)
- Removed all uses of
case_when
and replaced with base ifelse
, this was to address performance issues with dplyr v1.1.0
- System files for examples replaced with real data
- Slight change to method id and method context logic in
tabMWRwqx
- Functions that write files (e.g.,
qcMWRreview
) require explicit entry for the output_dir
argument
anlzMWRmap
now imports NHD layers from external source (no user changes)
- Added a
NEWS.md
file to track changes to the package.
MassWateR 2.0.0 (2023-01-20)
- Initial CRAN release following beta testing