NEWS

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tbeptools 3.1.1

• Added show_tbniscrseas() to plot seasonal (monthly) Tampa Bay Nekton Index results for a single bay segment and year, with boxplots of site-level values overlaid with jittered points, the same red/yellow/green perc score category background as show_tbniscr() when plotting the TBNI score, and plotly tooltips showing station
• Added show_ambitab() and show_ambitrend(), and AMBI/AMBI-TB background and examples in the TBBI vignette
• Added anlz_splitdata(), anlz_splitsorms(), and show_splitbarplot() for summarizing data by period/storm splits
• Added read_importsealevels() and the sealevelstations dataset for NOAA sea level data, with vignette content
• Added read_importprism() and read_prism_rasters() for PRISM climate data
• Added read_importwqwin() and util_importwqwin() to retrieve water quality data from the FDEP WIN API
• Added read_importwqwa() and util_importwqwa() to retrieve Water Atlas data and metadata from its API, with vignette content
• Added util_rain() to replace the retired rnoaa package as a precipitation data source for anlz_hydroload()
• Added exceed_rate to anlz_fibmatrix() as a continuous analog to the letter grade scores
• Added the dbasin dataset and an experimental drainage-basin mapping option to show_fibmatmap(), including a bayseg list-output enhancement
• Added extend and covlab arguments to show_seagrasscoverage()
• Added retry with exponential backoff to read_importwqp() (via new util_importwqp()) and read_transect() for intermittent request failures
• show_boxplot() now plots points for the current year on top of other years
• show_hmpreport() legend and symbol sizing options improved for two-column output
• Fixed show_transect() to use the maximum value, rather than erroring, when more than one macroalgae species is recorded at the same meter mark
• Fixed a bug in seagrass transect date assignment that could create duplicate dates within the same year
• Fixed show_matrixplotly() and show_ratab() (for compatibility with dplyr/ggplot2 updates and 2024 results)
• Fixed show_fibmatmap() issues with listout and non-baywide output
• Replaced the deprecated size argument with linewidth for line-based ggplot2 geoms (geom_line(), geom_hline(), geom_vline(), geom_segment(), geom_sf()) across all plotting functions, and updated the default font family for compatibility with current ggplot2
• Removed mapview from Suggests; replaced mapview() examples in the seagrass transect, TBNI, TBBI, and tidal creeks vignettes with leaflet() using the ESRI World Gray Canvas basemap
• Removed the rnoaa, stringr, scales, and units dependencies and native pipe usage for improved R CMD check compliance; bumped the minimum required R version
• Updated EPC download endpoints for water quality, FIB, plankton, and benthic (base tables and results) data following changes to EPC's SharePoint hosting
• Updated the Water Atlas seagrass transect API endpoints
• fimdata, fimstations, epcdata, phytodata, benthicdata, sedimentdata, transect, seagrass, tidalcreeks, iwrraw, catchprecip, and county FIB/enterococcus datasets updated with 2024 and 2025 results
• Added tbsegdetailbcbs and swfwmdtbseg2024 spatial datasets; updated acres (2023 LULC) and subtacres

tbeptools 3.1.0

• show_matrixplotly() now uses automargin = T for complete x-axis text display
• Improved URL stability for nekton index ancillary file downloads
• Added tbsegdetail dataset for detailed bay segment polygons
• Updated read_formphyto() for correct taxa grouping for diatoms
• phytodata, epcdata, transect, seagrass, iwrraw, tidalcreeks data updated for 2024
• benthicdata, sedimentdata data updated for 2023
• show_sitesegmep() correctly drops segments not shown from legend; segment label display option added
• show_sitemap() now has angled axis text; segment label option added
• read_formphyto() default arguments updated for source data changes
• show_boxplot() now has option to remove jittered points and outliers using points argument
• lastlab argument in show_seagrasscoverage() is now logical
• show_ratab() font changed to Arial for PDF Quarto render compatibility
• Chaetomorpha genus option added to seagrass transect functions
• show_hmpreport() now has option to remove total intertidal column
• trnlns updated to include bay segment column
• anlz_transectave() now uses All instead of Tampa Bay
• FIB reporting functions overhauled; Enterococcus and E. coli used exclusively for marine/freshwater stations; expanded county data inclusion

tbeptools 3.0.0

• targets object updated with values for Boca Ciega Bay, Terra Ceia Bay, and Manatee River
• All data objects updated with current data
• Added HMP reporting functions and vignette
• Added sediment functions and vignette for benthic data
• Added show_seagrasscoverage() function
• SWFWMD Tampa Bay segment spatial object added
• all argument added to read_importwq() and read_formwq() to return all parameters
• Added FIB reporting functions and vignette (EPC and baywide)
• Added functions and vignette content supporting reasonable assurance reporting
• Mockery used for testing with web requests when able
• Numerous bug fixes and minor feature additions
• KC added as author

tbeptools 2.0.1

• Consistent color scheme established across all report cards (red, yellow, green, light blue, dark orange, brown)
• benthicdata updated with 2020 results; default arguments changed to 2020
• Updated download paths for read_importwq and read_importbenthic following EPCHC platform migration
• CITATION file added

tbeptools 2.0.0

• Turbidity and color added as output from read_formwq()
• Added width and height arguments to show_ functions creating plotly output
• Legend title fix in show_segplotly()
• Added family argument for text family to show_tbniscr()
• Output factor order of bay segments in anlz_tbbimed() changed
• Global font changes to show_thrplot() and show_boxplot()
• Added size argument to show_tdlcrkmatrix()
• transect object updated with 2021 results; default year arguments changed
• Added sppcol argument for color in show_transect(); Caulerpa default color changed
• All default arguments with 2019 updated to 2021
• trnpts and trnlns data objects updated
• All plotly objects default download option set to SVG
• Updated URL download locations for all EPC data
• Removed read_chkdate; simplified EPC file import workflow

tbeptools 1.1.0

• Release for JOSS paper

tbeptools 1.0.2

• Added raw argument to read_transect() for unformatted transect results
• Functions organized by concept on reference website
• anlz_tdlcrkindic() updated to include DO saturation exceedances
• seagrass data object includes 2020 estimates
• yrrng argument in show_matrix() defaults to input data range
• Added show_tdlcrkradar() plot function
• Added radar argument to anlz_tdlcrkindic() for show_tdlcrkradar() output specification
• Package dependencies reduced for R CMD check compliance
• tidalcreeks and iwrraw data updated for IWR run 61
• Training year returned for multiple years in read_formtransect()
• Added yr argument to show_compplot() for training year selection
• fimdata and fimstations updated with 2020 results
• Minor bug fixes for read_formfim() bay segment assignments
• Benthic data import/formatting no longer uses RODBC; now uses zipped CSV files
• benthicdata updated with 2019 results
• Added sgseg and sgmanagement objects for seagrass boundaries

tbeptools 1.0.0

• Initial release