Package: WtRegDO 1.0.2

WtRegDO: Implement Weighted Regression on Dissolved Oxygen Time Series

A sample dataset and functions to implement weighted regression on dissolved oxygen time series are included as a simple example to reduce the effects of tidal advection. Functions are also available to estimate net ecosystem metabolism using the open-water method.

Authors:Marcus W. Beck [aut, cre]

WtRegDO_1.0.2.tar.gz
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WtRegDO_1.0.2.tgz(r-4.4-any)WtRegDO_1.0.2.tgz(r-4.3-any)
WtRegDO_1.0.2.tar.gz(r-4.5-noble)WtRegDO_1.0.2.tar.gz(r-4.4-noble)
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WtRegDO.pdf |WtRegDO.html✨
WtRegDO/json (API)

# Install 'WtRegDO' in R:

install.packages('WtRegDO', repos = c('https://fawda123.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/fawda123/wtregdo/issues

Datasets:

SAPDC - Sample dataset for weighted regression
metab_dtd - Ecosystem metabolism for SAPDC from detided DO
metab_obs - Ecosystem metabolism for SAPDC from observed DO
sfbay - San Francisco Bay water quality data
wtreg_res - Results from weighted regression with the SAPDC dataset

On CRAN:

detiding metabolism weighted-regression

15 exports 5 stars 1.08 score 48 dependencies 43 scripts

Last updated 3 months agofrom:4ea340e1e1. Checks:OK: 7. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Sep 05 2024
R-4.5-win	OK	Sep 05 2024
R-4.5-linux	OK	Sep 05 2024
R-4.4-win	OK	Sep 05 2024
R-4.4-mac	OK	Sep 05 2024
R-4.3-win	OK	Sep 05 2024
R-4.3-mac	OK	Sep 05 2024

Exports:climmeans ecometab evalcor f_calcKL f_calcWanninkhof met_day_fun meteval objfun oxySchmidt oxySol smoother winopt wtfun wtobjfun wtreg

Dependencies:cli codetools colorspace cpp11 data.table dplyr fansi farver foreach generics ggplot2 glue gsw gtable isoband iterators labeling lattice lifecycle lubridate magrittr MASS Matrix mgcv munsell nlme oce pillar pkgconfig plyr purrr R6 RColorBrewer Rcpp reshape2 rlang scales stringi stringr suncalc tibble tidyr tidyselect timechange utf8 vctrs viridisLite withr

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Aggregete metabolism data	aggregate.metab
Calculate climate means for relevant weather variables	climmeans
Ecosystem metabolism	ecometab ecometab.default plot.metab
Evaluate tide and sun correlation	evalcor
Calculate oxygen mass transfer coefficient	f_calcKL
Calculate gas transfer velocity for Wanninkhof equation	f_calcWanninkhof
Identify metabolic days in a swmpr time series	met_day_fun
Ecosystem metabolism for SAPDC from detided DO	metab_dtd
Ecosystem metabolism for SAPDC from observed DO	metab_obs
Evaluate metabolism results	meteval meteval.metab
An objective function to minimize for finding optimal window widths	objfun
Calculate Schmidt number for oxygen	oxySchmidt
Dissolved oxygen at saturation	oxySol
Sample dataset for weighted regression	SAPDC
San Francisco Bay water quality data	sfbay
Smooth a plot of metabolism data	smoother smoother.default
Find the optimal half-window width combination	winopt
Get weights used during weighted regression	wtfun
An objective function to minimize plus weighted regression for finding optimal window widths	wtobjfun
Weighted regression for dissolved oxygen time series	wtreg
Results from weighted regression with the SAPDC dataset	wtreg_res