NeuralNetTools - Visualization and Analysis Tools for Neural Networks

Visualization and analysis tools to aid in the interpretation of neural network models. Functions are available for plotting, quantifying variable importance, conducting a sensitivity analysis, and obtaining a simple list of model weights.

Last updated 3 years ago

9.79 score 72 stars 6 dependents 524 scripts 4.6k downloads

tbeptools - Data and Indicators for the Tampa Bay Estuary Program

Several functions are provided for working with Tampa Bay Estuary Program data and indicators, including the water quality report card, tidal creek assessments, Tampa Bay Nekton Index, Tampa Bay Benthic Index, seagrass transect data, habitat report card, and fecal indicator bacteria. Additional functions are provided for miscellaneous tasks, such as reference library curation.

Last updated 13 days ago

data-analysistampa-baytbepwater-quality

7.80 score 9 stars 133 scripts

tbeptools - Data and Indicators for the Tampa Bay Estuary Program

Several functions are provided for working with Tampa Bay Estuary Program data and indicators, including the water quality report card, tidal creek assessments, Tampa Bay Nekton Index, Tampa Bay Benthic Index, seagrass transect data, habitat report card, and fecal indicator bacteria. Additional functions are provided for miscellaneous tasks, such as reference library curation.

Last updated 13 days ago

data-analysistampa-baytbepwater-quality

7.80 score 9 stars 133 scripts

rStrava - Access the 'Strava' API

Functions to access data from the 'Strava v3 API' <https://developers.strava.com/>.

Last updated 2 months ago

7.15 score 154 stars 57 scripts 591 downloads

SWMPr - Retrieving, Organizing, and Analyzing Estuary Monitoring Data

Tools for retrieving, organizing, and analyzing environmental data from the System Wide Monitoring Program of the National Estuarine Research Reserve System <https://cdmo.baruch.sc.edu/>. These tools address common challenges associated with continuous time series data for environmental decision making.

Last updated 4 months ago

6.76 score 13 stars 1 dependents 146 scripts 649 downloads

micromap - Linked Micromap Plots

This group of functions simplifies the creation of linked micromap plots. Please see <https://www.jstatsoft.org/v63/i02/> for additional details.

Last updated 2 months ago

ord

6.38 score 10 stars 53 scripts 921 downloads

micromap - Linked Micromap Plots

This group of functions simplifies the creation of linked micromap plots. Please see <https://www.jstatsoft.org/v63/i02/> for additional details.

Last updated 2 months ago

ord

6.33 score 9 stars 53 scripts 909 downloads

ggord - Ordination Plots with ggplot2

Create ordination biplots with ggplot2. Multiple methods are available including principal components analysis, correspondence analysis, nonmetric multidimensional scaling, multiple correspondence analysis, and linear discriminant analysis. Limited triplot methods are also available.

Last updated 5 months ago

6.19 score 63 stars 244 scripts

wqtrends - Assess Water Quality Trends with Generalized Additive Models

Assess Water Quality Trends for Long-Term Monitoring Data in Estuaries using Generalized Additive Models following Wood (2017) <doi:10.1201/9781315370279> and Error Propagation with Mixed-Effects Meta-Analysis following Sera et al. (2019) <doi:10.1002/sim.8362>. Methods are available for model fitting, assessment of fit, annual and seasonal trend tests, and visualization of results.

Last updated 4 months ago

reportingsan-francisco-baytime-series-analysiswater-quality

5.92 score 10 stars 24 scripts 145 downloads

wqtrends - Assess Water Quality Trends with Generalized Additive Models

Assess Water Quality Trends for Long-Term Monitoring Data in Estuaries using Generalized Additive Models following Wood (2017) <doi:10.1201/9781315370279> and Error Propagation with Mixed-Effects Meta-Analysis following Sera et al. (2019) <doi:10.1002/sim.8362>. Methods are available for model fitting, assessment of fit, annual and seasonal trend tests, and visualization of results.

Last updated 4 months ago

reportingsan-francisco-baytime-series-analysiswater-quality

5.92 score 10 stars 24 scripts 145 downloads

WRTDStidal - Weighted Regression for Water Quality Evaluation in Tidal Waters

An adaptation for estuaries (tidal waters) of weighted regression on time, discharge, and season to evaluate trends in water quality time series. Please see Beck and Hagy (2015) <doi:10.1007/s10666-015-9452-8> for details.

Last updated 1 years ago

weighted-regression

5.36 score 4 stars 115 scripts 232 downloads

MassWateR - Quality Control and Analysis of Massachusetts Water Quality Data

Methods for quality control and exploratory analysis of surface water quality data collected in Massachusetts, USA. Functions are developed to facilitate data formatting for the Water Quality Exchange Network <https://www.epa.gov/waterdata/water-quality-data-upload-wqx> and reporting of data quality objectives to state agencies. Quality control methods are from Massachusetts Department of Environmental Protection (2020) <https://www.mass.gov/orgs/massachusetts-department-of-environmental-protection>.

Last updated 11 days ago

5.19 score 11 stars 10 scripts 751 downloads

MassWateR - Quality Control and Analysis of Massachusetts Water Quality Data

Methods for quality control and exploratory analysis of surface water quality data collected in Massachusetts, USA. Functions are developed to facilitate data formatting for the Water Quality Exchange Network <https://www.epa.gov/waterdata/water-quality-data-upload-wqx> and reporting of data quality objectives to state agencies. Quality control methods are from Massachusetts Department of Environmental Protection (2020) <https://www.mass.gov/orgs/massachusetts-department-of-environmental-protection>.

Last updated 23 days ago

5.16 score 11 stars 10 scripts 787 downloads

imputeTestbench - Test Bench for the Comparison of Imputation Methods

Provides a test bench for the comparison of missing data imputation methods in uni-variate time series. Imputation methods are compared using different error metrics. Proposed imputation methods and alternative error metrics can be used.

Last updated 8 years ago

4.99 score 5 stars 2 dependents 20 scripts 3.3k downloads

imputeTestbench - Test Bench for the Comparison of Imputation Methods

Provides a test bench for the comparison of missing data imputation methods in uni-variate time series. Imputation methods are compared using different error metrics. Proposed imputation methods and alternative error metrics can be used.

Last updated 8 years ago

4.98 score 5 stars 2 dependents 20 scripts 3.2k downloads

EBASE - Estuarine Bayesian Single-Station Estimation Method for Ecosystem Metabolism

Estimate ecosystem metabolism in a Bayesian framework for individual water quality monitoring stations with continuous dissolved oxygen time series. A mass balance equation is used that provides estimates of parameters for gross primary production, respiration, and gas exchange. Methods adapted from Grace et al. (2015) <doi:10.1002/lom3.10011> and Wanninkhof (2014) <doi:10.4319/lom.2014.12.351>. Details in Beck et al. (2024) <doi:10.1002/lom3.10620>.

Last updated 3 months ago

metabolismjagscpp

4.91 score 18 scripts 190 downloads

peptools - Analysis Tools for Importing, Wrangling, and Summarizing Suffolk County Water Quality Data

Analysis tools for importing, wrangling, and summarizing Suffolk County water quality data. Functions are used to create reporting materials.

Last updated 10 months ago

data-analysispepwater-quality

4.33 score 53 scripts

peptools - Analysis Tools for Importing, Wrangling, and Summarizing Suffolk County Water Quality Data

Analysis tools for importing, wrangling, and summarizing Suffolk County water quality data. Functions are used to create reporting materials.

Last updated 10 months ago

data-analysispepwater-quality

4.33 score 53 scripts

tbeploads - Calculate Loading Data to Tampa Bay

Loading data from major sources to Tampa Bay are calculated on a monthly or annual basis. Major sources include domestic point source (reuse, end of pipe), industrial point source, material losses, non-point sources (MS4), atmospheric deposition, and groundwater.

Last updated 5 months ago

data-analysisloadstampa-baytbeptbnmcwater-quality

3.90 score 3 scripts

tbeploads - Calculate Loading Data to Tampa Bay

Loading data from major sources to Tampa Bay are calculated on a monthly or annual basis. Major sources include domestic point source (reuse, end of pipe), industrial point source, material losses, non-point sources (MS4), atmospheric deposition, and groundwater.

Last updated 5 months ago

data-analysisloadstampa-baytbeptbnmcwater-quality

3.90 score 3 scripts

WtRegDO - Implement Weighted Regression on Dissolved Oxygen Time Series

A sample dataset and functions to implement weighted regression on dissolved oxygen time series are included as a simple example to reduce the effects of tidal advection. Functions are also available to estimate net ecosystem metabolism using the open-water method.

Last updated 7 months ago

detidingmetabolismweighted-regression

3.50 score 5 stars 42 scripts