NeuralNetTools - Visualization and Analysis Tools for Neural Networks
Visualization and analysis tools to aid in the interpretation of neural network models. Functions are available for plotting, quantifying variable importance, conducting a sensitivity analysis, and obtaining a simple list of model weights.
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10.06 score 72 stars 6 dependents 638 scripts 7.0k downloads
tbeptools - Data and Indicators for the Tampa Bay Estuary Program
Several functions are provided for working with Tampa Bay Estuary Program data and indicators, including the water quality report card, tidal creek assessments, Tampa Bay Nekton Index, Tampa Bay Benthic Index, seagrass transect data, habitat report card, and fecal indicator bacteria. Additional functions are provided for miscellaneous tasks, such as reference library curation.
Last updated
data-analysistampa-baytbepwater-quality
8.01 score 9 stars 1 dependents 144 scriptstbeptools - Data and Indicators for the Tampa Bay Estuary Program
Several functions are provided for working with Tampa Bay Estuary Program data and indicators, including the water quality report card, tidal creek assessments, Tampa Bay Nekton Index, Tampa Bay Benthic Index, seagrass transect data, habitat report card, and fecal indicator bacteria. Additional functions are provided for miscellaneous tasks, such as reference library curation.
Last updated
data-analysistampa-baytbepwater-quality
8.01 score 9 stars 1 dependents 144 scriptsrStrava - Access the 'Strava' API
Functions to access data from the 'Strava v3 API' <https://developers.strava.com/>.
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7.38 score 169 stars 78 scripts 705 downloadsmicromap - Linked Micromap Plots
This group of functions simplifies the creation of linked micromap plots. Please see <https://www.jstatsoft.org/v63/i02/> for additional details.
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ordresearch
6.30 score 11 stars 60 scripts 743 downloadsmicromap - Linked Micromap Plots
This group of functions simplifies the creation of linked micromap plots. Please see <https://www.jstatsoft.org/v63/i02/> for additional details.
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ordresearch
6.27 score 11 stars 56 scripts 742 downloadswqtrends - Assess Water Quality Trends with Generalized Additive Models
Assess Water Quality Trends for Long-Term Monitoring Data in Estuaries using Generalized Additive Models following Wood (2017) <doi:10.1201/9781315370279> and Error Propagation with Mixed-Effects Meta-Analysis following Sera et al. (2019) <doi:10.1002/sim.8362>. Methods are available for model fitting, assessment of fit, annual and seasonal trend tests, and visualization of results.
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reportingsan-francisco-baytime-series-analysiswater-quality
6.16 score 13 stars 32 scripts 471 downloadswqtrends - Assess Water Quality Trends with Generalized Additive Models
Assess Water Quality Trends for Long-Term Monitoring Data in Estuaries using Generalized Additive Models following Wood (2017) <doi:10.1201/9781315370279> and Error Propagation with Mixed-Effects Meta-Analysis following Sera et al. (2019) <doi:10.1002/sim.8362>. Methods are available for model fitting, assessment of fit, annual and seasonal trend tests, and visualization of results.
Last updated
reportingsan-francisco-baytime-series-analysiswater-quality
6.16 score 13 stars 32 scripts 507 downloadsggord - Ordination Plots with ggplot2
Create ordination biplots with ggplot2. Multiple methods are available including principal components analysis, correspondence analysis, nonmetric multidimensional scaling, multiple correspondence analysis, and linear discriminant analysis. Limited triplot methods are also available.
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5.95 score 67 stars 269 scriptsSWMPr - Retrieving, Organizing, and Analyzing Estuary Monitoring Data
Tools for retrieving, organizing, and analyzing environmental data from the System Wide Monitoring Program of the National Estuarine Research Reserve System <https://cdmo.baruch.sc.edu/>. These tools address common challenges associated with continuous time series data for environmental decision making.
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5.95 score 13 stars 138 scripts 661 downloadsWRTDStidal - Weighted Regression for Water Quality Evaluation in Tidal Waters
An adaptation for estuaries (tidal waters) of weighted regression on time, discharge, and season to evaluate trends in water quality time series. Please see Beck and Hagy (2015) <doi:10.1007/s10666-015-9452-8> for details.
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weighted-regression
5.35 score 4 stars 111 scripts 545 downloadsimputeTestbench - Test Bench for the Comparison of Imputation Methods
Provides a test bench for the comparison of missing data imputation methods in uni-variate time series. Imputation methods are compared using different error metrics. Proposed imputation methods and alternative error metrics can be used.
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5.06 score 6 stars 1 dependents 27 scripts 4.8k downloadsimputeTestbench - Test Bench for the Comparison of Imputation Methods
Provides a test bench for the comparison of missing data imputation methods in uni-variate time series. Imputation methods are compared using different error metrics. Proposed imputation methods and alternative error metrics can be used.
Last updated
5.06 score 6 stars 1 dependents 27 scripts 4.8k downloads
tbeploads - Calculate Loading Data to Tampa Bay
Loading data from major sources to Tampa Bay are calculated on a monthly or annual basis. Major sources include domestic point source (reuse, end of pipe), industrial point source, material losses, non-point sources (MS4), atmospheric deposition, and groundwater.
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data-analysisloadstampa-baytbeptbnmcwater-quality
5.05 score 12 scriptstbeploads - Calculate Loading Data to Tampa Bay
Loading data from major sources to Tampa Bay are calculated on a monthly or annual basis. Major sources include domestic point source (reuse, end of pipe), industrial point source, material losses, non-point sources (MS4), atmospheric deposition, and groundwater.
Last updated
data-analysisloadstampa-baytbeptbnmcwater-quality
5.05 score 12 scriptssplinemixmeta - Additive Mixed Meta-Analysis with Spline Meta-Regression
Fit additive mixed meta-analysis (AMMA) models, extending the 'mixmeta' package <https://cran.r-project.org/package=mixmeta> to allow for spline-based meta-regression. Functions combine features of 'mgcv' <https://cran.r-project.org/package=mgcv> for building spline components and 'mixmeta' for estimating general mixed-effects meta-analysis models.
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4.78 score 2 stars 3 scripts 434 downloads
EBASE - Estuarine Bayesian Single-Station Estimation Method for Ecosystem Metabolism
Estimate ecosystem metabolism in a Bayesian framework for individual water quality monitoring stations with continuous dissolved oxygen time series. A mass balance equation is used that provides estimates of parameters for gross primary production, respiration, and gas exchange. Methods adapted from Grace et al. (2015) <doi:10.1002/lom3.10011> and Wanninkhof (2014) <doi:10.4319/lom.2014.12.351>. Details in Beck et al. (2024) <doi:10.1002/lom3.10620>.
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metabolismjagscpp
3.95 score 18 scripts 221 downloads
slrcsap - Lightweight Tools to Create Sea Level Rise Projections for the Tampa Bay Region
Lightweight tools to download data and create plots for sea level rise projections in the Tampa Bay region. Plots are produced to support recommendations of the Climate Science Advisory Panel facilitated by the Tampa Bay Estuary Program. Data are from NOAA Tides and Currents web page <https://tidesandcurrents.noaa.gov/> and the Interagency Sea Level Rise Scenario Tool <https://sealevel.nasa.gov/task-force-scenario-tool>.
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climate-changecsapindicatorstampa-baytbep
3.70 score 4 scriptsslrcsap - Lightweight Tools to Create Sea Level Rise Projections for the Tampa Bay Region
Lightweight tools to download data and create plots for sea level rise projections in the Tampa Bay region. Plots are produced to support recommendations of the Climate Science Advisory Panel facilitated by the Tampa Bay Estuary Program. Data are from NOAA Tides and Currents web page <https://tidesandcurrents.noaa.gov/> and the Interagency Sea Level Rise Scenario Tool <https://sealevel.nasa.gov/task-force-scenario-tool>.
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climate-changecsapindicatorstampa-baytbep
3.70 score 4 scriptsWtRegDO - Implement Weighted Regression on Dissolved Oxygen Time Series
A sample dataset and functions to implement weighted regression on dissolved oxygen time series are included as a simple example to reduce the effects of tidal advection. Functions are also available to estimate net ecosystem metabolism using the open-water method.
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detidingmetabolismweighted-regression
3.47 score 6 stars 49 scriptspeptools - Analysis Tools for Importing, Wrangling, and Summarizing Suffolk County Water Quality Data
Analysis tools for importing, wrangling, and summarizing Suffolk County water quality data. Functions are used to create reporting materials.
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data-analysispepwater-quality
2.53 score 68 scriptspeptools - Analysis Tools for Importing, Wrangling, and Summarizing Suffolk County Water Quality Data
Analysis tools for importing, wrangling, and summarizing Suffolk County water quality data. Functions are used to create reporting materials.
Last updated
data-analysispepwater-quality
2.53 score 68 scripts